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The overall administration and supervision of the institute is under the control of the Ministry of Health and Family Welfare (MOH&FW), Government of Bangladesh. The Head of the Institute is the Director, who controls, supervises and monitors the activities of the institute. The institute consists of 12 departments, namely Bio-statistics, Community Medicine, Epidemiology, Health Education, Maternal and Child Health, Medical Entomology, Microbiology and Mycology, Nutrition and Biochemistry, Occupational and Environmental Health, Parasitology, Population Dynamics and Public Health and Hospital Administration. An Academic Council constituted by the heads of the departments of NIPSOM, Heads of allied institutes, a representative from the MOH&FW and other experts to act as a quality control board for all activities of NIPSOM.